3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00489

Details:

PFam ID : PF00489

PFam Domain Description : Interleukin-6/G-CSF/MGF family

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 72

Average sequence length: 124.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00489	A9KII1_CLOPH_1_75	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00489	O55041_CRIGR_1_101	100

Sequence based PCA Plot of the family - PF00489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay