3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00488

Details:

PFam ID : PF00488

PFam Domain Description : MutS domain V

Number of Sequence in 50% Dataset : 267

Number of Sequence in Full Dataset : 2710

Average sequence length: 219.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00488	A9KII1_CLOPH_1_75	77.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00488	F2Y275_9PHYC_1_76	100

Sequence based PCA Plot of the family - PF00488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=138 Length=11
Motif2 Start=161 Length=23
Motif3 Start=198 Length=8
Motif4 Start=82 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay