3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00487

Details:

PFam ID : PF00487

PFam Domain Description : Fatty acid desaturase

Number of Sequence in 50% Dataset : 486

Number of Sequence in Full Dataset : 3897

Average sequence length: 230.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00487	B3GDA9_CAEBE_94_222	99.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00487	Q8YKX6_NOSS1_42_265	97.9

Sequence based PCA Plot of the family - PF00487 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=120 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay