3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00486

Details:

PFam ID : PF00486

PFam Domain Description : Transcriptional regulatory protein, C terminal

Number of Sequence in 50% Dataset : 700

Number of Sequence in Full Dataset : 12166

Average sequence length: 75.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00486	A4MWF6_HAEIF_1_44	82.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00486	C4RMJ1_9ACTO_19_117	99.9

Sequence based PCA Plot of the family - PF00486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=2 Length=14
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay