3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00483

Details:

PFam ID : PF00483

PFam Domain Description : Nucleotidyl transferase

Number of Sequence in 50% Dataset : 664

Number of Sequence in Full Dataset : 6900

Average sequence length: 238.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00483	D8E0B2_PREBR_4_42	71.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00483	E5X076_9BACE_3_75	99.8

Sequence based PCA Plot of the family - PF00483 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=14
Motif2 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay