3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00479

Details:

PFam ID : PF00479

PFam Domain Description : Glucose-6-phosphate dehydrogenase, NAD binding domain

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 1330

Average sequence length: 169.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00479	A4Q906_LEIBR_3_95	84.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00479	C1MXL7_MICPC_17_220	100

Sequence based PCA Plot of the family - PF00479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=68 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay