3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00478

Details:

PFam ID : PF00478

PFam Domain Description : IMP dehydrogenase / GMP reductase domain

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 1568

Average sequence length: 404.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00478	D5EKE5_CORAD_26_511	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00478	Q4TGB6_TETNG_116_169	100

Sequence based PCA Plot of the family - PF00478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=14
Motif2 Start=25 Length=11
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay