3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00476

Details:

PFam ID : PF00476

PFam Domain Description : DNA polymerase family A

Number of Sequence in 50% Dataset : 256

Number of Sequence in Full Dataset : 1880

Average sequence length: 340.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00476	E4YZN1_OIKDI_416_811	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00476	E3M1E1_CAERE_219_377	99.9

Sequence based PCA Plot of the family - PF00476 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=200 Length=8
Motif3 Start=160 Length=8
Motif4 Start=213 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay