3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00475

Details:

PFam ID : PF00475

PFam Domain Description : Imidazoleglycerol-phosphate dehydratase

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 869

Average sequence length: 143.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00475	E1Z451_9CHLO_64_130	52.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00475	B7FZT2_PHATC_33_180	100

Sequence based PCA Plot of the family - PF00475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=8
Motif2 Start=66 Length=8
Motif3 Start=133 Length=14
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay