3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00467

Details:

PFam ID : PF00467

PFam Domain Description : KOW motif

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 2142

Average sequence length: 33.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00467	A4RU75_OSTLU_66_97	37.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00467	E1C8B5_CHICK_342_375	90.8

Sequence based PCA Plot of the family - PF00467 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay