3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00465

Details:

PFam ID : PF00465

PFam Domain Description : Iron-containing alcohol dehydrogenase

Number of Sequence in 50% Dataset : 573

Number of Sequence in Full Dataset : 3463

Average sequence length: 349.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00465	Q70M52_9EURY_1_179	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00465	C4TSH9_YERKR_1_72	100

Sequence based PCA Plot of the family - PF00465 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=8
Motif4 Start=54 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay