3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00463

Details:

PFam ID : PF00463

PFam Domain Description : Isocitrate lyase family

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 844

Average sequence length: 229.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00463	E7R4U7_PICAD_1_469	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00463	F2GH80_MYCTU_21_297	99.7

Sequence based PCA Plot of the family - PF00463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=106 Length=8
Motif3 Start=82 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay