3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00462

Details:

PFam ID : PF00462

PFam Domain Description : Glutaredoxin

Number of Sequence in 50% Dataset : 297

Number of Sequence in Full Dataset : 3110

Average sequence length: 62.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00462	F0VLN3_NEOCA_25_87	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00462	A9KJE3_CLOPH_163_230	99.7

Sequence based PCA Plot of the family - PF00462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay