3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00460

Details:

PFam ID : PF00460

PFam Domain Description : Flagellar hook-length control protein FliK

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 2506

Average sequence length: 29.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00460	Q4Q5W6_LEIMA_19_274	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00460	E6Q803_9ZZZZ_4_34	99.6

Sequence based PCA Plot of the family - PF00460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay