3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00458

Details:

PFam ID : PF00458

PFam Domain Description : WHEP-TRS domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 339

Average sequence length: 55.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00458	E3K7K9_PUCGT_13_71	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00458	E3K7K9_PUCGT_13_71	100

Sequence based PCA Plot of the family - PF00458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=18
Motif2 Start=9 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay