3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00457

Details:

PFam ID : PF00457

PFam Domain Description : Glycosyl hydrolases family 11

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 346

Average sequence length: 161.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00457	B9W0F5_9ZZZZ_1_69	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00457	B2WKQ7_PYRTR_48_115	99.7

Sequence based PCA Plot of the family - PF00457 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay