3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00456

Details:

PFam ID : PF00456

PFam Domain Description : Transketolase, thiamine diphosphate binding domain

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 2955

Average sequence length: 253.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00456	E2PW45_STRCL_146_234	58.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00456	B4DVU1_HUMAN_1_106	99.5

Sequence based PCA Plot of the family - PF00456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=20
Motif2 Start=59 Length=8
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay