3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00455

Details:

PFam ID : PF00455

PFam Domain Description : DeoR C terminal sensor domain

Number of Sequence in 50% Dataset : 589

Number of Sequence in Full Dataset : 2367

Average sequence length: 159.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00455	D6EJE3_STRLI_42_224	93.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00455	D6EJE3_STRLI_42_224	100

Sequence based PCA Plot of the family - PF00455 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=59 Length=14
Motif3 Start=12 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay