3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00449

Details:

PFam ID : PF00449

PFam Domain Description : Urease alpha-subunit, N-terminal domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 438

Average sequence length: 117.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00449	D2UZ80_NAEGR_73_155	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00449	E6UBX8_RUMA7_2_86	98.8

Sequence based PCA Plot of the family - PF00449 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=8
Motif2 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay