3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00447

Details:

PFam ID : PF00447

PFam Domain Description : HSF-type DNA-binding

Number of Sequence in 50% Dataset : 144

Number of Sequence in Full Dataset : 797

Average sequence length: 98.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00447	B0EBV0_ENTDI_6_181	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00447	B0EBV0_ENTDI_6_181	100

Sequence based PCA Plot of the family - PF00447 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=57 Length=8
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay