3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00446

Details:

PFam ID : PF00446

PFam Domain Description : Gonadotropin-releasing hormone

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 11

Average sequence length: 9.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00446	Q5YLH6_LAMTR_25_34	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00446	Q5YLH6_LAMTR_25_34	100

Sequence based PCA Plot of the family - PF00446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay