3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00443

Details:

PFam ID : PF00443

PFam Domain Description : Ubiquitin carboxyl-terminal hydrolase

Number of Sequence in 50% Dataset : 1524

Number of Sequence in Full Dataset : 3479

Average sequence length: 380.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00443	D8TVL1_VOLCA_2018_2517	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00443	D7LJ21_ARALL_1_167	99.7

Sequence based PCA Plot of the family - PF00443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=671 Length=8
Motif2 Start=584 Length=11
Motif3 Start=4 Length=20
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay