3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00441

Details:

PFam ID : PF00441

PFam Domain Description : Acyl-CoA dehydrogenase, C-terminal domain

Number of Sequence in 50% Dataset : 679

Number of Sequence in Full Dataset : 8318

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00441	B8FHV4_DESAA_275_371	74.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00441	F0NCL2_SULIR_7_86	99.9

Sequence based PCA Plot of the family - PF00441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=53 Length=8
Motif2 Start=40 Length=8
Motif3 Start=90 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay