3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00440

Details:

PFam ID : PF00440

PFam Domain Description : Bacterial regulatory proteins, tetR family

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 18813

Average sequence length: 46.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00440	A1RCX6_ARTAT_16_62	50.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00440	Q390A1_BURS3_37_83	99.9

Sequence based PCA Plot of the family - PF00440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=14
Motif3 Start=34 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay