3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00439

Details:

PFam ID : PF00439

PFam Domain Description : Bromodomain

Number of Sequence in 50% Dataset : 436

Number of Sequence in Full Dataset : 2372

Average sequence length: 83.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00439	D8LBU3_ECTSI_888_958	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00439	B9GLM8_POPTR_1_54	100

Sequence based PCA Plot of the family - PF00439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay