3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00437

Details:

PFam ID : PF00437

PFam Domain Description : Type II/IV secretion system protein

Number of Sequence in 50% Dataset : 471

Number of Sequence in Full Dataset : 4239

Average sequence length: 260.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00437	B0G1I6_9FIRM_137_267	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00437	A4V6Y2_PSEFS_23_111	100

Sequence based PCA Plot of the family - PF00437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=8
Motif2 Start=94 Length=8
Motif3 Start=161 Length=20
Motif4 Start=134 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay