3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00431

Details:

PFam ID : PF00431

PFam Domain Description : CUB domain

Number of Sequence in 50% Dataset : 1221

Number of Sequence in Full Dataset : 3370

Average sequence length: 106.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00431	B4G7L8_DROPE_94_132	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00431	B3SF50_TRIAD_3_66	99.8

Sequence based PCA Plot of the family - PF00431 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=29
Motif2 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay