3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00430

Details:

PFam ID : PF00430

PFam Domain Description : ATP synthase B/B' CF(0)

Number of Sequence in 50% Dataset : 417

Number of Sequence in Full Dataset : 1661

Average sequence length: 129.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00430	F2I0G5_9RICK_35_181	14.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00430	F2I0G5_9RICK_35_181	100

Sequence based PCA Plot of the family - PF00430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=56 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay