3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00426

Details:

PFam ID : PF00426

PFam Domain Description : Outer Capsid protein VP4 (Hemagglutinin)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 113

Average sequence length: 357.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00426	A0EXC2_9REOV_1_754	19.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00426	A0EXC2_9REOV_1_754	100

Sequence based PCA Plot of the family - PF00426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay