3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00425

Details:

PFam ID : PF00425

PFam Domain Description : chorismate binding enzyme

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 2704

Average sequence length: 250.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00425	E0PE26_STREI_1_47	71.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00425	A6G5F5_9DELT_127_397	100

Sequence based PCA Plot of the family - PF00425 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=78 Length=8
Motif3 Start=57 Length=14
Motif4 Start=36 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay