3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00423

Details:

PFam ID : PF00423

PFam Domain Description : Haemagglutinin-neuraminidase

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 189

Average sequence length: 391.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00423	B5TRK4_9PARA_1_115	69.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00423	C6FGZ0_9PARA_12_566	100

Sequence based PCA Plot of the family - PF00423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay