3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00420

Details:

PFam ID : PF00420

PFam Domain Description : NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 2747

Average sequence length: 96.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00420	C9P518_VIBME_1_55	21.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00420	C3Q4F2_9BACE_6_67	93.6

Sequence based PCA Plot of the family - PF00420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay