3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00419

Details:

PFam ID : PF00419

PFam Domain Description : CS1 type fimbrial major subunit

Number of Sequence in 50% Dataset : 728

Number of Sequence in Full Dataset : 1973

Average sequence length: 150.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00419	C4SZW8_YERIN_1_79	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00419	E9WQG4_ECOLX_31_112	97.1

Sequence based PCA Plot of the family - PF00419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay