3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00418

Details:

PFam ID : PF00418

PFam Domain Description : Tau and MAP protein, tubulin-binding repeat

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 157

Average sequence length: 29.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00418	A8XLL4_CAEBR_312_331	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00418	Q16296_HUMAN_1_23	99.3

Sequence based PCA Plot of the family - PF00418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay