3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00414

Details:

PFam ID : PF00414

PFam Domain Description : Neuraxin and MAP1B repeat

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 27

Average sequence length: 16.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00414	D5QRB3_METTR_48_300	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00414	Q5H9P1_HUMAN_1182_1198	92.3

Sequence based PCA Plot of the family - PF00414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay