3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00412

Details:

PFam ID : PF00412

PFam Domain Description : LIM domain

Number of Sequence in 50% Dataset : 352

Number of Sequence in Full Dataset : 3071

Average sequence length: 56.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00412	B3MCP7_DROAN_124_152	98.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00412	A8QD64_MALGO_463_535	99.9

Sequence based PCA Plot of the family - PF00412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay