3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00406

Details:

PFam ID : PF00406

PFam Domain Description : Adenylate kinase

Number of Sequence in 50% Dataset : 275

Number of Sequence in Full Dataset : 2159

Average sequence length: 165.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00406	E1GRU9_LOALO_1_56	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00406	A6BIS3_9FIRM_8_68	100

Sequence based PCA Plot of the family - PF00406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=11
Motif2 Start=19 Length=14
Motif3 Start=2 Length=11
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay