3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00405

Details:

PFam ID : PF00405

PFam Domain Description : Transferrin

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 514

Average sequence length: 233.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00405	Q7QF98_ANOGA_390_455	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00405	D3Z4X8_MOUSE_13_38	99.6

Sequence based PCA Plot of the family - PF00405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=2 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay