3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00404

Details:

PFam ID : PF00404

PFam Domain Description : Dockerin type I repeat

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 602

Average sequence length: 20.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00404	Q7UVU1_RHOBA_870_890	76

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00404	C7HEB2_CLOTM_626_646	98.3

Sequence based PCA Plot of the family - PF00404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay