3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00403

Details:

PFam ID : PF00403

PFam Domain Description : Heavy-metal-associated domain

Number of Sequence in 50% Dataset : 436

Number of Sequence in Full Dataset : 6340

Average sequence length: 61.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00403	Q2LPI9_SYNAS_16_72	87.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00403	B9T330_RICCO_47_110	99.0

Sequence based PCA Plot of the family - PF00403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay