3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00402

Details:

PFam ID : PF00402

PFam Domain Description : Calponin family repeat

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 150

Average sequence length: 24.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00402	E5SY14_TRISP_257_279	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00402	F1L588_ASCSU_161_188	100

Sequence based PCA Plot of the family - PF00402 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay