3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00401

Details:

PFam ID : PF00401

PFam Domain Description : ATP synthase, Delta/Epsilon chain, long alpha-helix domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 703

Average sequence length: 48.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00401	Q5QA84_ACOGR_85_110	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00401	D6YWH5_WADCW_85_132	97.5

Sequence based PCA Plot of the family - PF00401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=36 Length=8
Motif2 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay