3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00400

Details:

PFam ID : PF00400

PFam Domain Description : WD domain, G-beta repeat

Number of Sequence in 50% Dataset : 2405

Number of Sequence in Full Dataset : 65528

Average sequence length: 38.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00400	C5DCT3_LACTC_22_39	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00400	B8LW86_TALSN_214_277	73

Sequence based PCA Plot of the family - PF00400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=18
Motif2 Start=31 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay