3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00399

Details:

PFam ID : PF00399

PFam Domain Description : Yeast PIR protein repeat

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 143

Average sequence length: 17.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00399	C5DCT3_LACTC_22_39	45.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00399	A6RKB1_BOTFB_196_213	100

Sequence based PCA Plot of the family - PF00399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay