3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00397

Details:

PFam ID : PF00397

PFam Domain Description : WW domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 1960

Average sequence length: 30.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00397	C4QL20_SCHMA_3_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00397	D0N852_PHYIT_37_68	100

Sequence based PCA Plot of the family - PF00397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay