3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00396

Details:

PFam ID : PF00396

PFam Domain Description : Granulin

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 310

Average sequence length: 43.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00396	C4QL20_SCHMA_3_32	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00396	C4QL20_SCHMA_3_32	100

Sequence based PCA Plot of the family - PF00396 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay