3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00394

Details:

PFam ID : PF00394

PFam Domain Description : Multicopper oxidase

Number of Sequence in 50% Dataset : 238

Number of Sequence in Full Dataset : 3016

Average sequence length: 144.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00394	D7R908_9BACT_91_167	82.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00394	E3QS71_COLGM_174_385	70

Sequence based PCA Plot of the family - PF00394 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=96 Length=14
Motif2 Start=126 Length=8
Motif3 Start=23 Length=8
Motif4 Start=77 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay