3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00393

Details:

PFam ID : PF00393

PFam Domain Description : 6-phosphogluconate dehydrogenase, C-terminal domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 1264

Average sequence length: 216.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00393	B9IZS4_BACCQ_13_98	66

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00393	E9ET20_METAR_196_291	100

Sequence based PCA Plot of the family - PF00393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=56 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay