3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00392

Details:

PFam ID : PF00392

PFam Domain Description : Bacterial regulatory proteins, gntR family

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 12165

Average sequence length: 62.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00392	Q2CJ81_9RHOB_14_90	6.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00392	A0P0A0_9RHOB_64_126	100

Sequence based PCA Plot of the family - PF00392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=8
Motif2 Start=33 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay