3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00390

Details:

PFam ID : PF00390

PFam Domain Description : Malic enzyme, N-terminal domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 1563

Average sequence length: 130.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00390	B3VH78_9TELE_1_44	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00390	B7Q731_IXOSC_61_237	100

Sequence based PCA Plot of the family - PF00390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=14
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay